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A taxonomy of see-through tools (1994)
Eric A. Bier, Maureen C. Stone, Ken Fishkin, William Buxton and Thomas Baudel
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The "Silk Cursor": investigating transparency for 3D target acquisition (1994)
Shumin Zhai, William Buxton and Paul Milgram
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Transparent layered user interfaces: an evaluation of a display design to enhance focused and divided attention (1995)
Beverly L. Harrison, Hiroshi Ishii, Kim J. Vicente and William A. S. Buxton
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Using small screen space more efficiently (1996)
Tomonari Kamba, Shawn A. Elson, Terry Harpold, Tim Stamper and Piyawadee Sukaviriya
Another transparency paper (Professor Harpold may disagree).
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An experimental evaluation of transparent menu usage (1997)
Beverly L. Harrison and Kim J. Vicente
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Multiagent model of dynamic design: visualization as an emergent behavior of active design agents (1997)
Suguru Ishizaki
This is also a paper about transparency (and more). Ishizaki's stuff is beautiful...
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